Recent Publications

A wordcloud image made from the publication titles. On a black background the largest words that stand out in red are: virus, viruses, effects, mice, and viral; in blue: protein, infection, responses, cell, cattle, porcine, and pigs; and in white: human, vaccine, swine, genetic, and identification.

A word cloud of NCV research publication topics in the last 5 years (January 1, 2019 - September 5, 2024).

Recent Publications by NCV members

2023

1: Kumari S, Chaudhari J, Huang Q, Gauger P, De Almeida MN, Ly H, Liang Y, Vu
HLX. Assessment of Immune Responses to a Trivalent Pichinde Virus-Vectored
Vaccine Expressing Hemagglutinin Genes from Three Co-Circulating Influenza A
Virus Subtypes in Pigs. Vaccines (Basel). 2023 Dec 2;11(12):1806. doi:
10.3390/vaccines11121806. PMID: 38140210; PMCID: PMC10748346.

2: Lievens EJP, Agarkova IV, Dunigan DD, Van Etten JL, Becks L. Efficient assays
to quantify the life history traits of algal viruses. Appl Environ Microbiol.
2023 Dec 21;89(12):e0165923. doi: 10.1128/aem.01659-23. Epub 2023 Nov 21. PMID:
38092674; PMCID: PMC10734466.

3: Solis-Leal A, Boby N, Mallick S, Cheng Y, Wu F, De La Torre G, Dufour J,
Alvarez X, Shivanna V, Liu Y, Fennessey CM, Lifson JD, Li Q, Keele BF, Ling B.
Lymphoid tissues contribute to plasma viral clonotypes early after
antiretroviral therapy interruption in SIV-infected rhesus macaques. Sci Transl
Med. 2023 Dec 13;15(726):eadi9867. doi: 10.1126/scitranslmed.adi9867. Epub 2023
Dec 13. PMID: 38091409; PMCID: PMC11244655.

4: Wiggins J, Nguyen N, Wei W, Wang LL, Hollingsead Olson H, Xiang SH. Lactic
acid bacterial surface display of scytovirin inhibitors for anti-ebolavirus
infection. Front Microbiol. 2023 Nov 23;14:1269869. doi:
10.3389/fmicb.2023.1269869. PMID: 38075878; PMCID: PMC10704896.

5: Walker LR, Vu HL, Montooth KL, Ciobanu DC. Functional and evolutionary
analysis of host Synaptogyrin-2 in porcine circovirus type 2 susceptibility.
PLoS Genet. 2023 Nov 27;19(11):e1011029. doi: 10.1371/journal.pgen.1011029.
PMID: 38011217; PMCID: PMC10703400.

6: Luong HQ, Lai HTL, Truong LQ, Nguyen TN, Vu HD, Nguyen HT, Nguyen LT, Pham
TH, McVey DS, Vu HLX. Comparative Analysis of Swine Antibody Responses following
Vaccination with Live-Attenuated and Killed African Swine Fever Virus Vaccines.
Vaccines (Basel). 2023 Nov 3;11(11):1687. doi: 10.3390/vaccines11111687. PMID:
38006019; PMCID: PMC10674706.

7: Hurst JP, Sato S, Ferris T, Yobi A, Zhou Y, Angelovici R, Clemente TE,
Holding DR. Editing the 19 kDa alpha-zein gene family generates non-
opaque2-based quality protein maize. Plant Biotechnol J. 2024 Apr;22(4):946-959.
doi: 10.1111/pbi.14237. Epub 2023 Nov 21. PMID: 37988568; PMCID: PMC10955486.

8: Delhon G, Khatiwada S, Doub D, Harris S, Chaulagain S, El-Gaffary M, Rock DL.
Bovine papular stomatitis virus as a vaccine vector for cattle. J Gen Virol.
2023 Nov;104(11):001914. doi: 10.1099/jgv.0.001914. PMID: 37976092; PMCID:
PMC10768693.

9: White KS, Walker JA, Wang J, Autissier P, Miller AD, Abuelezan NN, Burrack R,
Li Q, Kim WK, Williams KC. Simian immunodeficiency virus-infected rhesus
macaques with AIDS co-develop cardiovascular pathology and encephalitis. Front
Immunol. 2023 Oct 27;14:1240946. doi: 10.3389/fimmu.2023.1240946. PMID:
37965349; PMCID: PMC10641955.

10: Julius P, Kang G, Siyumbwa S, Musumali J, Tso FY, Ngalamika O, Kaile T,
Maate F, Moonga P, West JT, Angeletti P, Wood C. Co-infection and co-
localization of Kaposi sarcoma-associated herpesvirus and Epstein-Barr virus in
HIV-associated Kaposi sarcoma: a case report. Front Cell Infect Microbiol. 2023
Oct 20;13:1270935. doi: 10.3389/fcimb.2023.1270935. PMID: 37928187; PMCID:
PMC10623342.

11: McMahon-Cole H, Johnson A, Sadat Aghamiri S, Helikar T, Crawford LB.
Modeling and Remodeling the Cell: How Digital Twins and HCMV Can Elucidate the
Complex Interactions of Viral Latency, Epigenetic Regulation, and Immune
Responses. Curr Clin Microbiol Rep. 2023 Sep;10(3):141-151. doi:
10.1007/s40588-023-00201-w. Epub 2023 Jul 29. PMID: 37901689; PMCID:
PMC10601359.

12: Nguyen TN, Kumari S, Sillman S, Chaudhari J, Lai DC, Vu HLX. A Single-Dose
Intramuscular Immunization of Pigs with Lipid Nanoparticle DNA Vaccines Based on
the Hemagglutinin Antigen Confers Complete Protection against Challenge
Infection with the Homologous Influenza Virus Strain. Vaccines (Basel). 2023 Oct
15;11(10):1596. doi: 10.3390/vaccines11101596. PMID: 37896997; PMCID:
PMC10611089.

13: Pekarek MJ, Weaver EA. Existing Evidence for Influenza B Virus Adaptations
to Drive Replication in Humans as the Primary Host. Viruses. 2023 Sep
30;15(10):2032. doi: 10.3390/v15102032. PMID: 37896807; PMCID: PMC10612074.

14: Sur M, Rasquinha MT, Arumugam R, Massilamany C, Gangaplara A, Mone K,
Lasrado N, Yalaka B, Doiphode A, Gurumurthy C, Steffen D, Reddy J. Transgenic
Mice Expressing Functional TCRs Specific to Cardiac Myhc-α 334-352 on Both CD4
and CD8 T Cells Are Resistant to the Development of Myocarditis on C57BL/6
Genetic Background. Cells. 2023 Sep 25;12(19):2346. doi: 10.3390/cells12192346.
PMID: 37830560; PMCID: PMC10571761.

15: Keynia S, Jaafar L, Zhou Y, Anderson CT, Turner JA. Stomatal opening
efficiency is controlled by cell wall organization in <i>Arabidopsis
thaliana</i>. PNAS Nexus. 2023 Sep 11;2(9):pgad294. doi:
10.1093/pnasnexus/pgad294. PMID: 37731948; PMCID: PMC10508357.

16: Mone K, Reddy J. The knowns and unknowns of cardiac autoimmunity in viral
myocarditis. Rev Med Virol. 2023 Nov;33(6):e2478. doi: 10.1002/rmv.2478. Epub
2023 Sep 2. PMID: 37658748.

17: Ho HVN, Dunigan DD, Salsbery ME, Agarkova IV, Al Ameeli Z, Van Etten JL,
DeLong JP. Viral Chemotaxis of Paramecium Bursaria Altered by Algal
Endosymbionts. Microb Ecol. 2023 Nov;86(4):2904-2909. doi:
10.1007/s00248-023-02292-w. Epub 2023 Aug 31. PMID: 37650927.

18: Neltner TJ, Sahoo PK, Smith RW, Anders JPV, Arnett JE, Ortega DG, Schmidt
RJ, Johnson GO, Natarajan SK, Housh TJ. Effects of High-Intensity, Eccentric-
Only Muscle Actions on Serum Biomarkers of Collagen Degradation and Synthesis. J
Strength Cond Res. 2023 Sep 1;37(9):1729-1737. doi:
10.1519/JSC.0000000000004457. PMID: 37616533.

19: Engel AJ, Paech S, Langhans M, van Etten JL, Moroni A, Thiel G, Rauh O.
Combination of hydrophobicity and codon usage bias determines sorting of model
K<sup>+</sup> channel protein to either mitochondria or endoplasmic reticulum.
Traffic. 2023 Nov;24(11):533-545. doi: 10.1111/tra.12915. Epub 2023 Aug 14.
PMID: 37578147.

20: Jiang Y, Angeletti PC, Hoffman AJ. Investigating the Physiological
Mechanisms between Resistance Training and Pain Relief in the Cancer Population:
A Literature Review. J Cancer Ther. 2023 Feb;14(2):80-101. doi:
10.4236/jct.2023.142008. Epub 2023 Feb 28. PMID: 37502393; PMCID: PMC10373509.

21: Julius P, Siyumbwa SN, Maate F, Moonga P, Kang G, Kaile T, West JT, Wood C,
Angeletti PC. Yes-associated protein-1 overexpression in ocular surface squamous
neoplasia; a potential diagnostic marker and therapeutic target. Front Oncol.
2023 Jul 5;13:1213426. doi: 10.3389/fonc.2023.1213426. PMID: 37476371; PMCID:
PMC10354641.

22: Sexton NR, Cline PJ, Gallichotte EN, Fitzmeyer E, Young MC, Janich AJ,
Pabilonia KL, Ehrhart N, Ebel GD. SARS-CoV-2 entry into and evolution within a
skilled nursing facility. Sci Rep. 2023 Jul 19;13(1):11657. doi:
10.1038/s41598-023-38544-5. PMID: 37468595; PMCID: PMC10356950.

23: Parperides E, El Mounadi K, Garcia-Ruiz H. Induction and suppression of gene
silencing in plants by nonviral microbes. Mol Plant Pathol. 2023
Oct;24(10):1347-1356. doi: 10.1111/mpp.13362. Epub 2023 Jul 12. PMID: 37438989;
PMCID: PMC10502822.

24: Long NS, Hales KE, Berry ED, Legako JF, Woerner DR, Broadway PR, Carroll JA,
Burdick Sanchez NC, Fernando SC, Wells JE. Antibimicrobial Susceptibility of
Trimethoprim-Sulfamethoxazole and 3rd-Generation Cephalosporin-Resistant
<i>Escherichia coli</i> Isolates Enumerated Longitudinally from Feedlot Arrival
to Harvest in High-Risk Beef Cattle Administered Common Metaphylactic
Antimicrobials. Foodborne Pathog Dis. 2023 Jul;20(7):252-260. doi:
10.1089/fpd.2023.0001. Epub 2023 Jun 29. PMID: 37384919.

25: Esmael A, Agarkova IV, Dunigan DD, Zhou Y, Van Etten JL. Viral DNA
Accumulation Regulates Replication Efficiency of <i>Chlorovirus</i> OSy-NE5 in
Two Closely Related <i>Chlorella variabilis</i> Strains. Viruses. 2023 Jun
9;15(6):1341. doi: 10.3390/v15061341. PMID: 37376640; PMCID: PMC10302427.

26: Crawford LB. Hematopoietic stem cells and betaherpesvirus latency. Front
Cell Infect Microbiol. 2023 Jun 6;13:1189805. doi: 10.3389/fcimb.2023.1189805.
PMID: 37346032; PMCID: PMC10279960.

27: Zilbauer M, James KR, Kaur M, Pott S, Li Z, Burger A, Thiagarajah JR,
Burclaff J, Jahnsen FL, Perrone F, Ross AD, Matteoli G, Stakenborg N, Sujino T,
Moor A, Bartolome-Casado R, Bækkevold ES, Zhou R, Xie B, Lau KS, Din S, Magness
ST, Yao Q, Beyaz S, Arends M, Denadai-Souza A, Coburn LA, Gaublomme JT, Baldock
R, Papatheodorou I, Ordovas-Montanes J, Boeckxstaens G, Hupalowska A, Teichmann
SA, Regev A, Xavier RJ, Simmons A, Snyder MP, Wilson KT; Gut Cell Atlas
Consortium; Human Cell Atlas Gut Biological Network Consortium. A Roadmap for
the Human Gut Cell Atlas. Nat Rev Gastroenterol Hepatol. 2023 Sep;20(9):597-614.
doi: 10.1038/s41575-023-00784-1. Epub 2023 May 31. PMID: 37258747; PMCID:
PMC10527367.

28: Petro-Turnquist E, Pekarek M, Jeanjaquet N, Wooledge C, Steffen D, Vu H,
Weaver EA. Adenoviral-vectored epigraph vaccine elicits robust, durable, and
protective immunity against H3 influenza A virus in swine. Front Immunol. 2023
May 15;14:1143451. doi: 10.3389/fimmu.2023.1143451. PMID: 37256131; PMCID:
PMC10225514.

29: Eaton CW, Vu HL, Hodges AL, Harris SP, Kachman SD, Ciobanu DC. Host-genetic-
based outcome of co-infection by PCV2b and PRRSV in pigs. J Anim Sci. 2023 Jan
3;101:skad164. doi: 10.1093/jas/skad164. PMID: 37210473; PMCID: PMC10284038.

30: Sreenivasan CC, Liu R, Gao R, Guo Y, Hause BM, Thomas M, Naveed A, Clement
T, Rausch D, Christopher-Hennings J, Nelson E, Druce J, Zhao M, Kaushik RS, Li
Q, Sheng Z, Wang D, Li F. Influenza C and D Viruses Demonstrated a Differential
Respiratory Tissue Tropism in a Comparative Pathogenesis Study in Guinea Pigs. J
Virol. 2023 Jun 29;97(6):e0035623. doi: 10.1128/jvi.00356-23. Epub 2023 May 18.
PMID: 37199648; PMCID: PMC10308911.

31: DeLong JP, Van Etten JL, Dunigan DD. Lessons from Chloroviruses: the Complex
and Diverse Roles of Viruses in Food Webs. J Virol. 2023 May 31;97(5):e0027523.
doi: 10.1128/jvi.00275-23. Epub 2023 May 1. PMID: 37133447; PMCID: PMC10231191.

32: Dunigan DD, Agarkova IV, Esmael A, Alvarez S, Van Etten JL. Early-Phase
Drive to the Precursor Pool: Chloroviruses Dive into the Deep End of Nucleotide
Metabolism. Viruses. 2023 Mar 31;15(4):911. doi: 10.3390/v15040911. PMID:
37112891; PMCID: PMC10142491.

33: Pattnaik A, Sahoo BR, Struble LR, Borgstahl GEO, Zhou Y, Franco R, Barletta
RG, Osorio FA, Petro TM, Pattnaik AK. A Ferritin Nanoparticle-Based Zika Virus
Vaccine Candidate Induces Robust Humoral and Cellular Immune Responses and
Protects Mice from Lethal Virus Challenge. Vaccines (Basel). 2023 Apr
10;11(4):821. doi: 10.3390/vaccines11040821. PMID: 37112733; PMCID: PMC10143468.

34: Bennett SJ, Davila CA, Reyes Z, Valentín-Acevedo A, Gocchi Carrasco K,
Abadie R, Marlin MC, Beel M, Chapple AG, Fernando S, Guthridge JM, Chiou KS,
Dombrowski K, West JT, Wood C. Immune profiling in Puerto Rican injection drug
users with and without HIV-1 infection. J Leukoc Biol. 2023 Jul
27;114(2):142-153. doi: 10.1093/jleuko/qiad045. PMID: 37042743; PMCID:
PMC10776106.

35: Watson SC, Furbeck RA, Fernando SC, Chaves BD, Sullivan GA. Spoilage
Pseudomonas survive common thermal processing schedules and grow in emulsified
meat during extended vacuum storage. J Food Sci. 2023 May;88(5):2162-2167. doi:
10.1111/1750-3841.16557. Epub 2023 Apr 7. PMID: 37026560.

36: Graham EH, Tom WA, Neujahr AC, Adamowicz MS, Clarke JL, Herr JR, Fernando
SC. The persistence and stabilization of auxiliary genes in the human skin
virome. Virol J. 2023 Mar 22;20(1):49. doi: 10.1186/s12985-023-02012-3. PMID:
36949545; PMCID: PMC10031188.

37: Kittana H, Gomes-Neto JC, Heck K, Juritsch AF, Sughroue J, Xian Y, Mantz S,
Segura Muñoz RR, Cody LA, Schmaltz RJ, Anderson CL, Moxley RA, Hostetter JM,
Fernando SC, Clarke J, Kachman SD, Cressler CE, Benson AK, Walter J, Ramer-Tait
AE. Evidence for a Causal Role for Escherichia coli Strains Identified as
Adherent-Invasive (AIEC) in Intestinal Inflammation. mSphere. 2023 Apr
20;8(2):e0047822. doi: 10.1128/msphere.00478-22. Epub 2023 Mar 8. PMID:
36883813; PMCID: PMC10117065.

38: Mone K, Lasrado N, Sur M, Reddy J. Vaccines against Group B Coxsackieviruses
and Their Importance. Vaccines (Basel). 2023 Jan 27;11(2):274. doi:
10.3390/vaccines11020274. PMID: 36851152; PMCID: PMC9961666.

39: Choi S, Yang Z, Wang Q, Qiao Z, Sun M, Wiggins J, Xiang SH, Lu Q. Displaying
and delivering viral membrane antigens via WW domain-activated extracellular
vesicles. Sci Adv. 2023 Jan 27;9(4):eade2708. doi: 10.1126/sciadv.ade2708. Epub
2023 Jan 27. PMID: 36706192; PMCID: PMC9882979.

40: Drury S, Claussen G, Zetterman A, Moriyama H, Moriyama EN, Zhang L.
Evolution and emergence of primate-specific interferon regulatory factor 9. J
Med Virol. 2023 Feb;95(2):e28521. doi: 10.1002/jmv.28521. PMID: 36691924; PMCID:
PMC10107944.

41: Sahoo BR, Crook AA, Pattnaik A, Torres-Gerena AD, Khalimonchuk O, Powers R,
Franco R, Pattnaik AK. Redox Regulation and Metabolic Dependency of Zika Virus
Replication: Inhibition by Nrf2-Antioxidant Response and NAD(H) Antimetabolites.
J Virol. 2023 Feb 28;97(2):e0136322. doi: 10.1128/jvi.01363-22. Epub 2023 Jan
23. PMID: 36688653; PMCID: PMC9972919.

42: Rasquinha MT, Lasrado N, Sur M, Mone K, Qiu H, Riethoven JJ, Sobel RA, Reddy
J. A Monovalent Mt10-CVB3 Vaccine Prevents CVB4-Accelerated Type 1 Diabetes in
NOD Mice. Vaccines (Basel). 2022 Dec 29;11(1):76. doi: 10.3390/vaccines11010076.
PMID: 36679922; PMCID: PMC9864234.

43: Thompson M, Ulu A, Mukherjee M, Yuil-Valdes AG, Thoene M, Van Ormer M,
Slotkowski R, Mauch T, Anderson-Berry A, Hanson CK, Nordgren TM, Natarajan SK.
Something Smells Fishy: How Lipid Mediators Impact the Maternal-Fetal Interface
and Neonatal Development. Biomedicines. 2023 Jan 10;11(1):171. doi:
10.3390/biomedicines11010171. PMID: 36672679; PMCID: PMC9855822.

44: Dhakal J, Vu H, Chaudhari J, Nguyen K, Chaves BD. Method validation for the
recovery of the porcine respiratory and reproductive syndrome virus, a potential
SARS-CoV-2 surrogate, from stainless steel. Lett Appl Microbiol. 2023 Feb
16;76(2):ovac068. doi: 10.1093/lambio/ovac068. PMID: 36660929.

2024

1: Gomaa AE, El Mounadi K, Parperides E, Garcia-Ruiz H. Cell Fractionation and
the Identification of Host Proteins Involved in Plant-Virus Interactions.
Pathogens. 2024 Jan 5;13(1):53. doi: 10.3390/pathogens13010053. PMID: 38251360;
PMCID: PMC10819628.

2: Kwon T, Artiaga BL, McDowell CD, Whitworth KM, Wells KD, Prather RS, Delhon
G, Cigan M, White SN, Retallick J, Gaudreault NN, Morozov I, Richt JA. Gene
editing of pigs to control influenza A virus infections. bioRxiv [Preprint].
2024 Jan 16:2024.01.15.575771. doi: 10.1101/2024.01.15.575771. Update in: Emerg
Microbes Infect. 2024 Dec;13(1):2387449. doi: 10.1080/22221751.2024.2387449.
PMID: 38293027; PMCID: PMC10827075.

3: Yao Q, Jia Y, Ma P. cellMarkerPipe: Cell Marker Identification and Evaluation
Pipeline in Single Cell Transcriptomes. Res Sq [Preprint]. 2024 Jan
17:rs.3.rs-3844718. doi: 10.21203/rs.3.rs-3844718/v1. Update in: Sci Rep. 2024
Jun 7;14(1):13151. doi: 10.1038/s41598-024-63492-z. PMID: 38313296; PMCID:
PMC10836098.

4: Petro-Turnquist E, Corder Kampfe B, Gadeken A, Pekarek MJ, Weaver EA.
Multivalent Epigraph Hemagglutinin Vaccine Protects against Influenza B Virus in
Mice. Pathogens. 2024 Jan 23;13(2):97. doi: 10.3390/pathogens13020097. PMID:
38392835; PMCID: PMC10892733.

5: Sur M, Rasquinha MT, Mone K, Massilamany C, Lasrado N, Gurumurthy C, Sobel
RA, Reddy J. Investigation into Cardiac Myhc-α 334-352-Specific TCR Transgenic
Mice Reveals a Role for Cytotoxic CD4 T Cells in the Development of Cardiac
Autoimmunity. Cells. 2024 Jan 26;13(3):234. doi: 10.3390/cells13030234. PMID:
38334626; PMCID: PMC10854502.

6: Neujahr AC, Loy DS, Loy JD, Brodersen BW, Fernando SC. Rapid detection of
high consequence and emerging viral pathogens in pigs. Front Vet Sci. 2024 Feb
7;11:1341783. doi: 10.3389/fvets.2024.1341783. PMID: 38384961; PMCID:
PMC10879307.

7: Rasquinha MT, Mone K, Sur M, Lasrado N, Massilamany C, Kachman SD, Steffen D,
Reddy J. Mt10 Vaccine Protects Diversity Outbred Mice from CVB3 Infection by
Producing Virus-Specific Neutralizing Antibodies and Diverse Antibody Isotypes.
Vaccines (Basel). 2024 Mar 4;12(3):266. doi: 10.3390/vaccines12030266. PMID:
38543901; PMCID: PMC10975958.

8: Vu HLX, McVey DS. Recent progress on gene-deleted live-attenuated African
swine fever virus vaccines. NPJ Vaccines. 2024 Mar 13;9(1):60. doi:
10.1038/s41541-024-00845-9. PMID: 38480758; PMCID: PMC10937926.

9: Lohani SC, Ramer-Tait AE, Li Q. High-fat diet feeding exacerbates HIV-1
rectal transmission. mSystems. 2024 Mar 19;9(3):e0132223. doi:
10.1128/msystems.01322-23. Epub 2024 Feb 2. PMID: 38303112; PMCID: PMC10949459.

10: Hurst JP, Sato S, Ferris T, Yobi A, Zhou Y, Angelovici R, Clemente TE,
Holding DR. Editing the 19 kDa alpha-zein gene family generates non-
opaque2-based quality protein maize. Plant Biotechnol J. 2024 Apr;22(4):946-959.
doi: 10.1111/pbi.14237. Epub 2023 Nov 21. PMID: 37988568; PMCID: PMC10955486.

11: Petro-Turnquist E, Pekarek MJ, Weaver EA. Swine influenza A virus:
challenges and novel vaccine strategies. Front Cell Infect Microbiol. 2024 Apr
3;14:1336013. doi: 10.3389/fcimb.2024.1336013. PMID: 38633745; PMCID:
PMC11021629.

12: Lai DC, Chaudhari J, Vu HLX. African swine fever virus early protein pI73R
suppresses the type-I IFN promoter activities. Virus Res. 2024 May;343:199342.
doi: 10.1016/j.virusres.2024.199342. Epub 2024 Mar 1. PMID: 38408646; PMCID:
PMC10918272.

13: Reith RR, Batt MC, Fuller AM, Meekins JM, Diehl KA, Zhou Y, Bedwell PS, Ward
JA, Sanders SK, Petersen JL, Steffen DJ. A recessive <i>CLN3</i> variant is
responsible for delayed-onset retinal degeneration in Hereford cattle. J Vet
Diagn Invest. 2024 May;36(3):438-446. doi: 10.1177/10406387241239918. Epub 2024
Mar 22. PMID: 38516801; PMCID: PMC11110775.

14: Jia Y, Ma P, Yao Q. CellMarkerPipe: cell marker identification and
evaluation pipeline in single cell transcriptomes. Sci Rep. 2024 Jun
7;14(1):13151. doi: 10.1038/s41598-024-63492-z. PMID: 38849445; PMCID:
PMC11161599.

15: Pandey KK, Sahoo BR, Pattnaik AK. Protein Nanoparticles as Vaccine Platforms
for Human and Zoonotic Viruses. Viruses. 2024 Jun 9;16(6):936. doi:
10.3390/v16060936. PMID: 38932228; PMCID: PMC11209504.

16: Wang J, Cheng Z, Yao Q, Liu L, Xu D, Hu G. Bioinformatics and biomedical
informatics with ChatGPT: Year one review. ArXiv [Preprint]. 2024 Jun
12:arXiv:2403.15274v2. Update in: Quant Biol. 2024 Dec;12(4):345-359. doi:
10.1002/qub2.67. PMID: 38562449; PMCID: PMC10984005.

17: Ribeiro FA, Lau SK, Furbeck RA, Herrera NJ, Henriott ML, Bland NA, Fernando
SC, Subbiah J, Pflanzer SB, Dinh TT, Miller RK, Sullivan GA, Calkins CR. Effects
of relative humidity on dry-aged beef quality. Meat Sci. 2024 Jul;213:109498.
doi: 10.1016/j.meatsci.2024.109498. Epub 2024 Mar 18. PMID: 38520828.

18: Vu HD, Luong HQ, Lai HTL, Nguyen HT, Pham TH, Truong LQ, Nguyen GV, Vu HLX.
Evaluation of the diagnostic sensitivity and specificity of two pen-side tests
for detecting African swine fever virus in experimentally infected pigs. Arch
Virol. 2024 Jul 30;169(8):170. doi: 10.1007/s00705-024-06098-0. PMID: 39080100;
PMCID: PMC11289199.

19: Zhang L. From imprecise "immune debt" to nuanced "immune shortage"? Infect
Dis Now. 2024 Aug;54(5):104894. doi: 10.1016/j.idnow.2024.104894. Epub 2024 Mar
27. PMID: 38548017.

20: Cheng X, Baki VB, Moran M, Liu B, Yu J, Zhao M, Li Q, Riethoven JJ,
Gurumurth CB, Harris EN, Sun X. Liver matrin-3 protects mice against hepatic
steatosis and stress response via constitutive androstane receptor. Mol Metab.
2024 Aug;86:101977. doi: 10.1016/j.molmet.2024.101977. Epub 2024 Jun 25. PMID:
38936659; PMCID: PMC11267048.

21: Marquis A, Hubing V, Ziemann C, Moriyama EN, Zhang L. The primate-specific
presence of interferon regulatory factor-5 pseudogene 1. J Med Virol. 2024
Aug;96(8):e29879. doi: 10.1002/jmv.29879. PMID: 39169736.

22: Liu B, Nguyen PL, Yu H, Li X, Wang H, Nguyen TGB, Sahoo PK, Sur M, Reddy J,
Sillman S, Kachman SD, Altartouri B, Lu G, Natarajan SK, Pattabiraman M, Yu J.
Honey vesicle-like nanoparticles protect aged liver from non-alcoholic
steatohepatitis. Acta Pharm Sin B. 2024 Aug;14(8):3661-3679. doi:
10.1016/j.apsb.2024.05.002. Epub 2024 May 10. PMID: 39220874; PMCID:
PMC11365403.

23: Cervantes-Pérez SA, Zogli P, Amini S, Thibivilliers S, Tennant S, Hossain
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24: Petro-Turnquist E, Madapong A, Steffen D, Weaver EA. Immunogenicity and
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25: Chiou KS, Feiger JA, Snyder RL, Davila CA, Gocci Carrasco N, Bennett SJ,
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26: Nguyen TN, Lai DC, Sillman S, Petro-Turnquist E, Weaver EA, Vu HLX. Lipid
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27: Pekarek MJ, Weaver EA. Influenza B Virus Vaccine Innovation through
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28: Bohannon DG, Zablocki-Thomas LD, Leung ES, Dupont JK, Hattler JB, Kowalewska
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29: Laha E, Jena D, Biswas VK, Singh S, Raghav SK, Pattnaik AK, Chattopadhyay S.
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30: Madapong A, Petro-Turnquist EM, Webby RJ, McCormick AA, Weaver EA. Immunity
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31: Wiggins J, Karim SU, Liu B, Li X, Zhou Y, Bai F, Yu J, Xiang SH.
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32: He C, Lv X, Liu J, Ruan J, Chen P, Huang C, Angeletti PC, Hua G, Moness ML,
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33: Zhang L. Exploring pathogen population density as a metric for understanding
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34: Zhu B, Li H, Lu B, Guo X, Wu C, Wang F, Li Q, Xie L, Glaser S, Francis H,
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35: Alex BG, Zhang ZY, Lasky D, Garcia-Ruiz H, Dewberry R, Allen C, Halterman D,
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36: Carvalho JVRP, Carlson RM, Ghosh J, Queiroz VF, de Oliveira EG, Botelho BB,
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37: Aluthge N, Adams S, Davila CA, Gocchi Carrasco NR, Chiou KS, Abadie R,
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38: Mandal S, Ghosh JS, Lohani SC, Zhao M, Cheng Y, Burrack R, Luo M, Li Q. A
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39: Kwon T, Artiaga BL, McDowell CD, Whitworth KM, Wells KD, Prather RS, Delhon
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40: Wang J, Cheng Z, Yao Q, Liu L, Xu D, Hu G. Bioinformatics and biomedical
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41: Watson SC, Neujahr AC, Chaves BD, Fernando SC, Sullivan GA. Environmental
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42: Laugieri ME, Speciale I, Gimeno A, Lin S, Byers BW, Poveda A, Núñez-Franco
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43: Durazo-Martinez K, Chaudhari J, Kumari S, Vu HLX. Porcine peritoneal
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44: Speciale I, Notaro A, Bruijns S, van Kooyk Y, Esmael A, Molinaro A,
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45: Guo X, Li H, Zhu B, Wang X, Xu Q, Aquino E, Koo M, Li Q, Cai J, Glaser S, Wu
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46: Chaudhari J, Lai DC, Vu HLX. African swine fever viral proteins that inhibit
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47: Seung BJ, Khatiwada S, Rock DL, Delhon G. Temporal and spatial
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2025

1: Mone K, Singh S, Abdullatif F, Sur M, Rasquinha MT, Seravalli J, Zinniel DK,
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2: Wang R, Chitlapilly Dass S, Palanisamy V, Zhou Y, Katz T, Bosilevac JM.
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processing plants and their impact on pathogen stress tolerance. Front
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3: Rauh O, Schulze T, Van Etten JL, Thiel G, Moroni A. Modular architecture of
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4: Wallis ZK, Midkiff CC, Zhao M, Kim SO, Amadeck A, Wang Y, Jakubowski M, Burdo
T, Miller AD, Li Q, Alvarez X, Blair RV, Williams KC. Resolving Inflammation:
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5: Lievens EJP, Agarkova IV, Dunigan DD, Van Etten JL, Becks L. High life
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6: Wang LL, Keiser P, Yang D, Seravalli J, Patten JJ, Eaton B, Anderson D, Liu
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7: Watson SC, Aluthge ND, Furbeck RA, Fernando SC, Chaves BD, Sullivan GA.
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8: Lakamp AD, Neujahr AC, Fernando SC, Snelling WM, Spangler ML. Short
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9: Pekarek MJ, Petro-Turnquist EM, Jeanjaquet NE, Hoagstrom KV, LaMontia-Hankin
E, Jahnke L, Madapong A, Weaver EA. Synthetic Neuraminidase Vaccine Induces
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10: Lakamp AD, Neujahr AC, Hille MM, Loy JD, Fernando SC, Spangler ML. Genetic
influence on the composition of the ocular microbiome in preweaned beef calves.
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11: Petro-Turnquist EM, Madapong A, Pekarek M, Steffen D, Weaver EA. Epitope-
optimized vaccine elicits enduring immunity against swine influenza A virus. Nat
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12: Henriques LR, Botelho BBF, Carlson RM, Carvalho JVRP, Oliveira EG, Agarkova
IV, Van Etten JL, Dunigan DD, Rodrigues RAL. Revealing the hidden diversity of
Chlorella heliozoae-infecting giant viruses. Npj Viruses. 2025 Feb 22;3(1):12.
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13: Van Etten JL, Agarkova IV, Dunigan DD, Shao Q, Fang Q. Emerging structure of
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14: Lai DC, Nguyen TN, Poonsuk K, McVey DS, Vu HLX. Lipid nanoparticle-
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15: Mone K, Garcia EJT, Abdullatif F, Rasquinha MT, Sur M, Hanafy M, Zinniel DK,
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16: Durazo-Martínez K, Chaudhari J, Sherry LM, Webster DA, Martins K, Bostrom
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17: Fang W, Yoo D, Li W, Vu H. Toward a better understanding of genetic
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18: Fernando SC, Adams S, Lakamp A, Spangler ML. International Symposium on
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19: Wang LL, Karim SU, Hand A, Brunkhorst R, Petersen M, Altman S, Liu Y, Zhang
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20: Wang LL, Alfson K, Eaton B, Mattix ME, Goez-Gazi Y, Holbrook MR, Carrion R
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21: Pekarek MJ, Madapong A, Wiggins J, Weaver EA. Adenoviral-Vectored
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22: Hubing V, Marquis A, Ziemann C, Moriyama H, Moriyama EN, Zhang L.
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23: Durazo-Martínez K, Osorio FA, Delhon G, Hernández J, Vu HLX. New insights
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24: Petro TM, Esmael A, Pattee GL, Al-Sarmi F, Chiodo F, Agarkova IV, Dunigan
DD, Van Etten JL. Expression of human superoxide dismutase (SOD) 1 G93A and
chlorovirus ATCV-1 SOD increases the response of macrophages to inflammatory
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25: Seung BJ, Khatiwada S, Rock DL, Delhon G. Temporal and spatial
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26: Dornbach CW, Wells JE, Berry ED, Fernando SC, Broadway PR, Hales KE.
Assessment of Antimicrobial Exposure on Generic <i>Escherichia coli</i> and
<i>Enterococcus</i> spp. Concentration, Prevalence, and Resistance to
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27: Vice Z, Zhou Y, Chitlapilly Dass S, Wang R. Microscopic Analysis of
Temperature Effects on Surface Colonization and Biofilm Morphology of
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28: Hewitt CR, Wixon NJ, Gallegos A, Zhou Y, Huber VC, Killian MS. Inactivation
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29: Wang LL, Seravalli J, Eaton B, Liu Y, Holbrook MR, Lan WJ, Xiang SH.
Identification of Filovirus Entry Inhibitors from Marine Fungus-Derived Indole
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30: Hodges AL, Walker LR, Everding T, Mote BE, Vu HLX, Ciobanu DC. Metagenomic
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